Downloads

Databases

Structure Database (LMSD)

LMSD Structure-data file (SDF) - Exports of structures and annotations from LIPID MAPS Structure Database (LMSD). (updated Jan 25, 2012)
- LMSDFDownload25Jan12.tar.gz (30MB)
- LMSDFDownload25Jan12.zip (32MB)

LMSD tab-separated values

LMSD_FA_20111215.tsv - Fatty Acyls (FA)
LMSD_GL_20111215.tsv - Glycerolipids (GL)
LMSD_GP_20111215.tsv - Glycerophospholipids (GP)
LMSD_SP_20111215.tsv - Sphingolipids (SP)
LMSD_ST_20111215.tsv - Sterol Lipids (ST)
LMSD_PR_20111215.tsv - Prenol Lipids (PR)
LMSD_SL_20111215.tsv - Saccharolipids (SL)
LMSD_PK_20111215.tsv - Polyketides (PK)
LMSD_20111215.tsv - all lipid categories

Proteome Database (LMPD)

LMPD tab-separated values - LMPD ID, Uniprot Accession, Uniprot Entry, Description, Taxonomy ID, EntrezGene ID, Primary Gene Name, Primary Gene Symbol, Sequence Length, Molecular Weight, Sequence.
LMPD.tsv (1.9MB)

Pathways

Pathway Editor

Pathway Editor - program for managing, visualizing, and editing signaling and metabolic pathways.

Tools

LIPID MAPS Tools Package. Command line Perl scripts to generate SD files containing structure and ontological data for various lipid categories.

LIPID MAPS MS Prediction Tool. A standalone Windows application for predicting possible molecular species for a given MS ion. This application enables a user to enter the m/z value of an unknown lipid ion and predict the most likely molecular species.

LIPID MAPS Ontology Tools Package. Command line Perl script to generate ontology data using structure data in SD file(s). The LIPID MAPS ontology script uses Perl modules from MayaChemTools package, an external open source Perl package, to generate ontology data and requires its local installation.

Protocols

Please see our Protocols page for protocol descriptions and links to download protocols in PDF format.

Posters

Download posters generated by LIPID MAPS consortium members.

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