Downloads

Databases

Structure Database (LMSD)

LMSD Structure-data file (SDF) - Exports of structures and annotations from LIPID MAPS Structure Database (LMSD). (updated March 30, 2010)
- LMSDFDownload30Mar10.tar.gz (22MB)
- LMSDFDownload30Mar10.zip (23MB)

Proteome Database (LMPD)

LMPD - tab separated values - LMPD ID, Uniprot Accession, Uniprot Entry, Description, Taxonomy ID, EntrezGene ID, Primary Gene Name, Primary Gene Symbol, Sequence Length, Molecular Weight, Sequence.
LMPD.tsv (1.9MB)

Pathways

Pathway Editor

• Pathway Editor
• Pathway Editor with SBML support - requires prior installation of libsbml, a software library that allows construction, reading, and writing models in the Systems Biology Markup Language (SBML, http://www.sbml.org). (See Pathway Editor tutorial: Installing SMBL.)

Tools

LIPID MAPS Tools Package. Command line Perl scripts to generate SD files containing structure and ontological data for various lipid categories.

• Download LIPID MAPS Tools package and documentation: lipidmapstools.tar.gz (376kb) or lipidmapstools.zip (568kb)

LIPID MAPS MS Prediction Tool. A standalone Windows application for predicting possible molecular species for a given MS ion. This application enables a user to enter the m/z value of an unknown lipid ion and predict the most likely molecular species.

• Download Installer (Lipid_MS_Predict_App_v1.5.msi) View Changelog
• Installation requirements: Windows 2000/XP/Vista containing the Microsoft .NET Framework

LIPID MAPS Ontology Tools Package. Command line Perl script to generate ontology data using structure data in SD file(s). The LIPID MAPS ontology script uses Perl modules from MayaChemTools package, an external open source Perl package, to generate ontology data and requires its local installation.

• Download LIPID MAPS Ontology Tools package: lmontologytools.tar.gz (16kb) or lmontologytools.zip (16kb)

Protocols

Please see our Protocols page for protocol descriptions and links to download protocols in PDF format.