Structure Database (LMSD)
Common Name
KDN-GM2(d18:1/22:0)
Systematic Name
GalNAcβ1-4(KDNα2-3)Galβ1-4Glcβ-Cer(d18:1/22:0)
Synonyms
LM ID
LMSP0601DG04
Formula
Exact Mass
Calculate m/z
1398.859888
Sum Composition
Status
Computationally Generated
3D model of KDN-GM2(d18:1/22:0)
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Category
Main Class
Sub Class
Biological Context
String Representations
InChiKey (Click to copy)
PKIVJDGSGYBTHK-ITFXHCNLSA-N
InChi (Click to copy)
InChI=1S/C69H126N2O26/c1-4-6-8-10-12-14-16-18-19-20-21-22-23-25-27-29-31-33-35-37-52(80)71-45(46(77)36-34-32-30-28-26-24-17-15-13-11-9-7-5-2)43-90-66-59(86)58(85)61(50(41-74)92-66)94-67-60(87)64(97-69(68(88)89)38-47(78)54(81)63(96-69)55(82)48(79)39-72)62(51(42-75)93-67)95-65-53(70-44(3)76)57(84)56(83)49(40-73)91-65/h34,36,45-51,53-67,72-75,77-79,81-87H,4-33,35,37-43H2,1-3H3,(H,70,76)(H,71,80)(H,88,89)/b36-34+/t45-,46+,47-,48+,49+,50+,51+,53+,54+,55+,56-,57+,58+,59+,60+,61+,62-,63+,64+,65-,66+,67-,69-/m0/s1
SMILES (Click to copy)
[C@](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3NC(=O)C)[C@H](O[C@]3(O[C@@]([H])([C@H](O)[C@H](O)CO)[C@H](O)[C@@H](O)C3)C(O)=O)[C@H]2O)[C@H](O)[C@H]1O)([H])(NC(CCCCCCCCCCCCCCCCCCCCC)=O)[C@]([H])(O)/C=C/CCCCCCCCCCCCC
Other Databases
PubChem CID
Calculated Physicochemical Properties
Heavy Atoms
97
Rings
4
Aromatic Rings
0
Rotatable Bonds
52
Van der Waals Molecular Volume
1392.80
Topological Polar Surface Area
460.84
Hydrogen Bond Donors
17
Hydrogen Bond Acceptors
26
logP
10.56
Molar Refractivity
366.82
Admin
Created at
-
Updated at
21st Jul 2021